Ernesto Perez-Rueda: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

1

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli

Denis Thieffry, Araceli M. Huerta, Ernesto Pérez-Rueda, Julio Collado-Vides

Journal:

Year:

1998

Language:

english

File:

PDF, 111 KB

english, 1998

2

Distribution of putative xenogeneic silencers in prokaryote genomes

Perez-Rueda, Ernesto, Ibarra, J. Antonio

Journal:

Computational Biology and Chemistry

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

3

The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria

Poot-Hernandez, Augusto Cesar, Rodriguez-Vazquez, Katya, Perez-Rueda, Ernesto

Journal:

Year:

2015

Language:

english

File:

PDF, 1.84 MB

english, 2015

4

Further Characterization of Functional Domains of PerA, Role of Amino and Carboxy Terminal Domains in DNA Binding

Ibarra, J. Antonio, García-Zacarias, Claudia M., Lara-Ochoa, Cristina, Carabarin-Lima, Alejandro, Tecpanecatl-Xihuitl, J. Sergio, Perez-Rueda, Ernesto, Martínez-Laguna, Ygnacio, Puente, José L., Steve

Journal:

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

5

Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors

Perez-Rueda, Ernesto, Hernandez-Guerrero, Rafael, Martinez-Nuñez, Mario Alberto, Armenta-Medina, Dagoberto, Sanchez, Israel, Ibarra, J. Antonio, Cloeckaert, Axel

Journal:

Year:

2018

Language:

english

File:

PDF, 3.23 MB

english, 2018

6

Identification of functional signatures in the metabolism of the three cellular domains of life

Escobar-Turriza, Pedro, Hernandez-Guerrero, Rafael, Poot-Hernández, Augusto Cesar, Rodríguez-Vázquez, Katya, Ramírez-Prado, Jorge, Pérez-Rueda, Ernesto, Hofmann, Andreas

Journal:

Year:

2019

File:

PDF, 1.42 MB

2019

7

The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution

Georgina Hernández-Montes, J Javier Díaz-Mejía, Ernesto Pérez-Rueda…

Journal:

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

8

Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches

Dagoberto Armenta-Medina, Ernesto Pérez-Rueda, Lorenzo Segovia

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.79 MB

english, 2011

9

The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors

J. Antonio Ibarra, Ernesto Pérez-Rueda, Lorenzo Segovia, J. Luis Puente

Journal:

Year:

2008

Language:

english

File:

PDF, 364 KB

english, 2008

10

Transcription unit conservation in the three domains of life: a perspective from Escherichia coli

Gabriel Moreno-Hagelsieb, Victor Treviño, Ernesto Pérez-Rueda, Temple F Smith, Julio Collado-Vides

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 45 KB

english, 2001

11

Electrostatic analysis of bacterial expansins

Pastor, Nina, Dávila, Sonia, Pérez-Rueda, Ernesto, Segovia, Lorenzo, Martínez-Anaya, Claudia

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 844 KB

english, 2015

12

Transcriptomic analysis of the process of biofilm formation inRhizobium etliCFN42

Reyes-Pérez, Agustín, Vargas, María del Carmen, Hernández, Magdalena, Aguirre-von-Wobeser, Eneas, Pérez-Rueda, Ernesto, Encarnacion, Sergio

Journal:

Archives of Microbiology

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

13

Characterization of pituitary growth hormone and its receptor in the green iguana (Iguana iguana)

Ávila-Mendoza, José, Carranza, Martha, Pérez-Rueda, Ernesto, Luna, Maricela, Arámburo, Carlos

Journal:

General and Comparative Endocrinology

Year:

2014

Language:

english

File:

PDF, 4.54 MB

english, 2014

14

Main Functions and Taxonomic Distribution of Virulence Genes in Brucella melitensis 16 M

Brambila-Tapia, Aniel Jessica Leticia, Armenta-Medina, Dagoberto, Rivera-Gomez, Nancy, Perez-Rueda, Ernesto, Cloeckaert, Axel

Journal:

Year:

2014

Language:

english

File:

PDF, 250 KB

english, 2014

15

Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens

Tenorio-Salgado, Silvia, Tinoco, Raunel, Vazquez-Duhalt, Rafael, Caballero-Mellado, Jesus, Perez-Rueda, Ernesto

Journal:

Year:

2013

Language:

english

File:

PDF, 3.33 MB

english, 2013

16

Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638

Denis, Antonia, Martínez-Núñez, Mario Alberto, Tenorio-Salgado, Silvia, Perez-Rueda, Ernesto

Journal:

Year:

2018

Language:

english

File:

PDF, 6.58 MB

english, 2018

17

The repertoire of DNA-binding transcription factors in prokaryotes: functional and evolutionary lessons

Perez-Rueda, Ernesto, Martinez-Nuñez, Mario Alberto

Journal:

Science Progress

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

18

A functional and phylogenetic comparison of quorum sensing related genes inBrucella melitensis16M

Aniel Jessica Leticia Brambila-Tapia,Ernesto Pérez-Rueda

Journal:

Journal of Microbiology

Year:

2014

Language:

english

File:

PDF, 219 KB

english, 2014

19

Genomic position analyses and the transcription machinery

Ernesto Pérez-Rueda, Jay D. Gralla, Julio Collado-Vides

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 198 KB

english, 1998

20

A network perspective on the evolution of metabolism by gene duplication

Juan Javier Díaz-Mejía, Ernesto Pérez-Rueda, Lorenzo Segovia

Journal:

Year:

2007

Language:

english

File:

PDF, 1.22 MB

english, 2007

21

Scaling relationship in the gene content of transcriptional machinery in bacteria

Pérez-Rueda, Ernesto, Janga, Sarath Chandra, Martínez-Antonio, Agustino

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 2.23 MB

english, 2009

22

Functional prediction of hypothetical transcription factors of Escherichia coli K-12 based on expression data

Flores-Bautista, Emanuel, Cronick, Carenne Ludeña, Fersaca, Anny Rodriguez, Martinez-Nuñez, Mario Alberto, Perez-Rueda, Ernesto

Journal:

Computational and Structural Biotechnology Journal

Year:

2018

Language:

english

File:

PDF, 10.02 MB

english, 2018

23

Deciphering the functional diversity of DNA-binding transcription factors in Bacteria and Archaea organisms

Flores-Bautista, Emanuel, Hernandez-Guerrero, Rafael, Huerta-Saquero, Alejandro, Tenorio-Salgado, Silvia, Rivera-Gomez, Nancy, Romero, Alba, Ibarra, Jose Antonio, Perez-Rueda, Ernesto, Ishihama, Akira

Journal:

Year:

2020

File:

PDF, 1.21 MB

2020

24

New insights on gene regulation in archaea

Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Perez-Rueda

Journal:

Computational Biology and Chemistry

Year:

2011

Language:

english

File:

PDF, 494 KB

english, 2011

25

Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics

Brambila-Tapia, Aniel Jessica Leticia, Poot-Hernández, Augusto Cesar, Perez-Rueda, Ernesto, Rodríguez-Vázquez, Katya

Journal:

Indian Journal of Microbiology

Year:

2016

Language:

english

File:

PDF, 518 KB

english, 2016

26

Identification and in silico characterization of two novel genes encoding peptidases S8 found by functional screening in a metagenomic library of Yucatán underground water

Apolinar–Hernández, Max M., Peña–Ramírez, Yuri J., Pérez-Rueda, Ernesto, Canto-Canché, Blondy B., De los Santos-Briones, César, O'Connor-Sánchez, Aileen

Journal:

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

27

Identification and analysis of DNA-binding transcription factors inBacillus subtilisand other Firmicutes- a genomic approach

Samadhi Moreno-Campuzano, Sarath Chandra Janga, Ernesto Pérez-Rueda

Journal:

Year:

2006

Language:

english

File:

PDF, 654 KB

english, 2006

28

The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains

Hernandez-Guerrero, Rafael, Galán-Vásquez, Edgardo, Pérez-Rueda, Ernesto, Hofmann, Andreas

Journal:

Year:

2019

File:

PDF, 2.27 MB

2019

29

Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins

Armando Hernandez-Mendoza, Carmen Quinto, Lorenzo Segovia, Ernesto Perez-Rueda

Journal:

Computational Biology and Chemistry

Year:

2007

Language:

english

File:

PDF, 1024 KB

english, 2007

30

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families

Sarath Chandra Janga, Ernesto Pérez-Rueda

Journal:

Computational Biology and Chemistry

Year:

2009

Language:

english

File:

PDF, 1012 KB

english, 2009

31

Coiled-coil domains enhance the membrane association of Salmonella type III effectors

Leigh A. Knodler, J. Antonio Ibarra, Ernesto Pérez-Rueda, Calvin K. Yip, Olivia Steele-Mortimer

Journal:

Cellular Microbiology

Year:

2011

Language:

english

File:

PDF, 1.58 MB

english, 2011

32

Characterization and distribution of GHRH, PACAP, TRH, SST and IGF1 mRNAs in the green iguana

Ávila-Mendoza, José, Pérez-Rueda, Ernesto, Urban-Sosa, Valeria, Carranza, Martha, Martínez-Moreno, Carlos G., Luna, Maricela, Arámburo, Carlos

Journal:

General and Comparative Endocrinology

Year:

2017

Language:

english

File:

PDF, 853 KB

english, 2017

33

Increments and Duplication Events of Enzymes and Transcription Factors Influence Metabolic and Regulatory Diversity in Prokaryotes

Martínez-Núñez, Mario Alberto, Poot-Hernandez, Augusto Cesar, Rodríguez-Vázquez, Katya, Perez-Rueda, Ernesto, Moustafa, Ahmed

Journal:

Year:

2013

Language:

english

File:

PDF, 583 KB

english, 2013

34

Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms

Martínez-Núñez, Mario, Rodríguez-Escamilla, Zuemy, Rodríguez-Vázquez, Katya, Pérez-Rueda, Ernesto

Journal:

Year:

2017

Language:

english

File:

PDF, 2.13 MB

english, 2017

35

Isolation and characterization of functional insertion sequences of rhizobia

Ismael Hernandez-Lucas, Jose Augusto Ramirez-Trujillo, Miguel Angel Gaitan, Xianwu Guo, Margarita Flores, Esperanza Martinez-Romero, Ernesto Perez-Rueda, Patrick Mavingui

Journal:

FEMS Microbiology Letters

Year:

2006

Language:

english

File:

PDF, 112 KB

english, 2006

36

Identification of beta-Lactamases and beta-Lactam-Related Proteins in Human Pathogenic Bacteria using a Computational Search Approach

Brambila-Tapia, Aniel Jessica Leticia, Perez-Rueda, Ernesto, Barrios, Humberto, Dávalos-Rodríguez, Nory Omayra, Dávalos-Rodríguez, Ingrid Patricia, Cardona-Muñoz, Ernesto Germán, Salazar-Páramo, Mario

Journal:

Current Microbiology

Year:

2017

Language:

english

File:

PDF, 451 KB

english, 2017

37

Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea

Ernesto Pérez-Rueda, Julio Collado-Vides, Lorenzo Segovia

Journal:

Computational Biology and Chemistry

Year:

2004

Language:

english

File:

PDF, 227 KB

english, 2004

38

Rhizobium etli asparaginase II

Huerta-Saquero, Alejandro, Evangelista-Martínez, Zahaed, Moreno-Enriquez, Angélica, Perez-Rueda, Ernesto

Journal:

Year:

2013

Language:

english

File:

PDF, 2.31 MB

english, 2013

39

Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data

Galán-Vásquez, Edgardo, Perez-Rueda, Ernesto

Journal:

Frontiers in Molecular Biosciences

Year:

2019

File:

PDF, 1.67 MB

2019

40

Protein homology detection and fold inference through multiple alignment entropy profiles

Alejandro Sánchez-Flores, Ernesto Pérez-Rueda, Lorenzo Segovia

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 317 KB

english, 2008

41

Common History at the Origin of the Position–Function Correlation in Transcriptional Regulators in Archaea and Bacteria

Ernesto Pérez-Rueda, Julio Collado-Vides

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 276 KB

english, 2001

42

Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein families

Dagoberto Armenta-Medina,Ernesto Perez-Rueda

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 132 KB

english, 2015

43

Comparative genomics of nucleotide metabolism: a tour to the past of the three cellular domains of life

Armenta-Medina, Dagoberto, Segovia, Lorenzo, Perez-Rueda, Ernesto

Journal:

Year:

2014

Language:

english

File:

PDF, 1.41 MB

english, 2014

44

The lifestyle of prokaryotic organisms influences the repertoire of promiscuous enzymes

Martínez-Núñez, Mario Alberto, Rodríguez-Vázquez, Katya, Pérez-Rueda, Ernesto

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 178 KB

english, 2015

45

The functional landscape bound to the transcription factors of Escherichia coli K-12

Pérez-Rueda, Ernesto, Tenorio-Salgado, Silvia, Huerta-Saquero, Alejandro, Balderas-Martínez, Yalbi I., Moreno-Hagelsieb, Gabriel

Journal:

Computational Biology and Chemistry

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

46

Do lifestyles influence the presence of promiscuous enzymes in bacteria and Archaea metabolism?

Martínez-Núñez, Mario Alberto, Pérez-Rueda, Ernesto

Journal:

Sustainable Chemical Processes

Year:

2016

Language:

english

File:

PDF, 1.31 MB

english, 2016

47

Identification of functional signatures in the metabolism of the three cellular domains of life

Escobar-Turriza, Pedro, Hernandez-Guerrero, Rafael, Poot-Hernández, Augusto Cesar, Rodríguez-Vázquez, Katya, Ramírez-Prado, Jorge, Pérez-Rueda, Ernesto, Hofmann, Andreas

Journal:

Year:

2019

Language:

english

File:

PDF, 1.42 MB

english, 2019

48

Editorial: Systems Modeling: Approaches and Applications

Martin, Alberto J., Perez-Rueda, Ernesto, Garrido, Daniel

Journal:

Frontiers in Molecular Biosciences

Year:

2020

File:

PDF, 94 KB

2020

49

Comparison of Metabolic Pathways in Escherichia coli by Using Genetic Algorithms

Ortegon, Patricia, Poot-Hernández, Augusto C., Perez-Rueda, Ernesto, Rodriguez-Vazquez, Katya

Journal:

Computational and Structural Biotechnology Journal

Year:

2015

Language:

english

File:

PDF, 2.69 MB

english, 2015

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@1delivery.pm

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски